differential_functional_enrichment

Run functional analysis on differential abundance analysis output

functional analysisfunctional enrichmentdifferentialover-representation analysis

https://github.com/nf-core/modules/[...]/subworkflows/nf-core/differential_functional_enrichment

Description

Run functional analysis on differential abundance analysis output

Input

name

description

pattern

`ch_input`

Channel with the input data for functional analysis.

`ch_contrasts`

Channel with contrast information

`ch_samplesheet`

Channel with sample information

`ch_featuresheet`

Channel with features information

Output

name

description

pattern

`versions`

File containing software versions
Structure: [ path(versions.yml) ]

versions.yml

`gprofiler2_all_enrich`

Channel containing the main enrichment table output from gprofiler2

`gprofiler2_sub_enrich`

Channel containing the secondary enrichment table output from gprofiler2.

`gprofiler2_plot_html`

Channel containing the html report generated from gprofiler2.

`gsea_report`

Channel containing all the output from GSEA needed for further reporting.

`decoupler_dc_estimate`

Channel containing decoupler estimate results.

`decoupler_dc_pvals`

Channel containing decoupler pvals results.

`decoupler_png`

Channel containing decoupler png results.

`grea_results`

Channel containing the output from GREA.