Download FASTQ files from SRA or ENA repositories.
meta:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
accession:string
ENA/SRA accession to query
fastq
*.fastq.gz:file
FASTQ files downloaded from ENA or SRA
*.fastq.gz
runinfo
*-run-info.tsv:file
Tab-delimited file containing metadata for each Run downloaded
*-run-info.tsv
runmergers
*-run-mergers.tsv:file
Tab-delimited file merge information from —group-by-experiment or —group-by-sample
*-run-mergers.tsv
versions
versions.yml:file
File containing software versions
versions.yml
A tool to download FASTQs associated with Study, Experiment, or Run accessions.
